Radical chemistry

Why do radicals have beneficial properties in our bodies?

Oxidative burst

Well, radical chemistry provides anti-microbial properties and radicals are paramagnetic so provide us a sense of magnetic north. The heart produces a magnetic field which impacts a persons radicals so when you are producing more radicals in your body you are more sensitive to the subtle energies in the fields around you.

Radicals play an important role in a persons vitality. The electron transport chain which is involved in generating the proton gradient in the mitochondria and responsible for the formation of ATP in conjunction with ATPase in the membrane generates radicals (superoxide). This also produces water through combining oxygen with hydrogen.

Radicals also play a role in modulating enzyme activity and biochemical pathways.

biochemical pathways

Cathepsin B which has a thiol (-SH) at the active site and is involved in endocytosis and cell migration is inhibited by radicals and has been shown to be inhibited by Manuka honey due to the generation of radicals.

The extracellular cascade (outside of the cell), receives signals from the external environment, these can occur through radical chemistry (see below).

The extracellular energy cascade

This cascade of reactions looks similar to the ones seen inside the mitochondria.


If you look at our own biochemical pathways for the generation of energy using the current standard understanding of oxidative phosphorylation based on glycolysis, the Krebs cycle (citric acid cycle) and the electron transport chain. One electron at a time should give you a clue that energy is obtained from radicals enabling a proton gradient to be generated. What are protons? (hydrogen without an orbital electron), which is +1 in charge. In my symmetry model the Up quark is -1 and the Down quark is +1 so overall the +1 proton is obtained through multiplication and not addition of fractions as is in the standard model. Where does that electron go? Single lone electrons are radicals. Biology has  evolved to harness energy in a controlled fashion but it uses energy available from radicals wherever it can as these processes do not require the expense of ATP energy. Radicals are environmentally sensitive to electromagnetism and play a role in perception of energy and to do that it uses the paramagnetic features of radicals that results in changing the chemical composition, which has a flow on effect in biology.  

Radical role in quantum entanglement

Radicals also have an important role in quantum entanglement. How is light held together in a coherent orderly fashion so that it works together to create structures without falling apart and without doing something that it should not do. As shown in this example where radicals have been used to generate a quantum entangled solution which responds coherently at different frequencies of light (UVA) to create biological structures.


Fenton chemistry and the hydroxyl radical is the most powerful oxidant but it also creates molecules in this process.

(1) Fe2+  + H2O2  → Fe3+  + HO• + OH–

(2) Fe3+  + H2O2  → Fe2+  + HOO• + H+

Iron(II)  is oxidized by hydrogen peroxide to  iron(III), forming a  hydroxyl radical  and a  hydroxide ion  in the process. Iron(III) is then reduced back to iron(II) by another molecule of hydrogen peroxide, forming a  hydroperoxyl  radical and a  proton. The net effect is a  disproportionation  of hydrogen peroxide to create two different oxygen-radical species, with water (H+  +  OH–) as a byproduct.

Both copper and iron can form hydroxyl radicals.

radicals 2

Production of neurotransmitters 

Production of neurotransmitters may also occur through radical chemistry. Both hydroxylation and methylation are processes that are needed to produce neurotransmitters in the body. The question I asked was: Does photo-fenton chemistry play a role in the hydroxylation of dopamine in the brain? Was dopamine first produced using light based chemistry in the subconscious mind before the evolution of enzymes that regulate the production of dopamine in the neurons through enzymatic approaches and is there any evidence for this hypothesis?

hydroxylation of neurotransmittersGeneration of hydroxylation of tyrosine to produce L-DOPA and the production of the neurotransmitter dopamine both requires Fe2+ (reduced iron), which is the form of iron that forms hydroxyl radicals with hydrogen peroxide and is part of the photo-Fenton system discovered  in Manuka honey. This appears to indicate that photo-Fenton based radical chemistry may have produced Dopamine like compounds in the brain prior to enzymatic synthesis of dopamine (protein mediated chemical reactions). The evolutionary concept being explored here is the concept that physics produces blueprints from which biology builds enzymatic systems around in order to gain greater functional control over chemical reactions in the body.  The original physics can still be observed in the enzyme at the active site where the physics of the reaction is taking place and the anatomical features of the reaction are evident of evolution from physics to chemistry and then biology.

Redox Biology Volume 10, December 2016, Pages 233-242. Hydroxytyrosol inhibits hydrogen peroxide-induced apoptotic signaling via labile iron chelation. https://doi.org/10.1016/j.redox.2016.10.006

Yes, radicals are important in biology. Anti-oxidants are also important. They capture the radicals to create molecules that the body uses. The hydroxyl group on neurotransmitters serotonin and dopamine are created by hydroxylation and the enzyme has Fe2+ at the active site. Radical chemistry creates OH* and creates the exact same structure but it does it much faster 1 billionth of a second. So has the potential to make 1,000,000,000 hydroxylation events in 1 second. More control by the enzyme creating a contained environment for the hydroxylation event to occur only on the aromatic ring but the reaction results in the same outcome produced by an enzyme or by hydroxyl radical generation. The evolutionary process started first in physics.

Cancer and radicals and their role in apoptosis

Cancer formation appears to be an adaptive response to stopping the normal radical chemistry that occurs in a cell undergoing apoptosis and generating CO2 and water from the dying cell as shown below.

apoptosis and radicals

Is cancer a result of a cell failing to undergo apoptosis (pre-programmed cell death)? If a cell fails to die and in the process accumulates enough changes in the cell to allow adaptation to occur by accumulating sufficient genetic modification to create a new cancer cell that has the ability to adapt to its environment by changing which genes are expressed.

Hydroxyl radical mediates cisplatin-induced apoptosis in human hair follicle dermal papilla cells and keratinocytes through Bcl-2-dependent mechanism. Apoptosis. 2011 Aug;16(8):769-82. doi: 10.1007/s10495-011-0609-x. by S Luanpitpong - ‎2011.  Studies using specific ROS scavengers further showed that hydroxyl radical, but not hydrogen peroxide or superoxide anion, is the primary oxidative species responsible for the apoptotic effect of cisplatin. Electron spin resonance studies confirmed the formation of hydroxyl radicals induced by cisplatin. 


Figure 8: Radicals processes in cell apoptosis (pre-programmed cell death) and production of apoptotic bodies

Apoptosis requires hydroxyl radicals to breakdown the biomaterials into CO2 and Water. Cellular damage occurs to convert biological molecules into CO2 and H2O. So radicals are important in biological signaling as well as cellular recycling events including apoptosis. Without apoptosis would cellular proliferation diseases be produced that leads to cancer formation?

What if we have got it wrong and radicals are not bad but important in health and vitality and by using purified anti-oxidants we are stopping he very free radicals in our bodies that are essential for apoptosis? What if we are turning off our natural apoptosis system of cellular death and regeneration and inducing proliferation diseases that initiates cancer formation?


Figure 16: Hydrogen peroxide signaling and apoptosis

The production of hydrogen peroxide can occur in the mitochondria by the production of superoxide and the enzyme superoxide dismutase. The pores in the mitochondria may enhance H2O2 release into the cell and Fenton chemistry is then responsible for the production of hydroxyl radicals and the ultimate compound responsible for the conversion of the cell back into CO2 and water. 

So from the above information it should start to become obvious that radicals and oxidative compounds including superoxide, nitric oxide, hydrogen peroxide and the hydroxyl radical are key functional molecules in cellular signaling and apoptosis. They appear to provide key mediators of biological processes including apoptosis, stem cell regeneration, neurotransmitter function.

growth factor signalling

What if the oxidative stress response was an adaption to change in the earths atmospheric conditions? The changes in the gas composition on our planet which went from an anoxic environment (without oxygen) to an oxygenated environment, before photosynthesis became widespread? This would suggest that anoxic biochemical pathways that did not require free oxygen as the terminal electron acceptor to have evolved before mitochondrial ATP based energy generation biochemical systems. The glyoxylase pathway would be a good example of the type of chemistry involved in early energy generation. The currently held widespread thinking is that the glyoxalase system is the main catabolic route for methylglyoxal, a non-enzymatic glycolytic byproduct with toxic and mutagenic effects. As this compound is highly reactive towards lysine, arginine and cysteine residues via radical chemistry it appears to regulate thiol oxidation states within the cell through reaction with glutathione (GSH).

It appears that stem cells in our bodies are located in environments that are low in oxygen and their evolutionary adaption and changes (differentiation into different cell phenotypes) occurs with the help of ROS (reactive oxygen species). The stem cell typically will not have functional mitochondria and this makes sense as the cellular environment with its low oxygen level means there is insufficient oxygen for mitochondria to function properly. So how do stem cells produce energy? My hypothesis is that they generate energy from ROS via radicals. So if we stop stem cell differentiation that requires ROS then anti-oxidants are impacting the regeneration processes that are occurring in our bodies. This suggests that antioxidants may accelerate aging in our bodies and that radicals are important for biological recycling and maintaining health and vitality. 

Nitric oxide

Nitric oxide is another critical signaling radical in our bodies. It is important in cardiovascular health and sexual function. The enzymes responsible for activity require iron and zinc for activity.


Nitric oxide is important radical  in vascular health and vasodilation.


Just think what would happen without the right signaling in the body. Dis-ease!

Balance and homeostatis

There is obviously a balance between health and disease. What if the pendulum has swung too far towards the anti-oxidant side of the pendulum? Low energy, low vitality, an inability to think on your feet and adapt quickly.



There is a potential misunderstanding about antioxidants, yes they create stability but radicals enable biological recycling through apoptosis. Does the body obtain harmony and balance by doing the opposite to what you add externally. So if you add antioxidants externally then your body does not need to produce as much of its own anti-oxidants. Also, your body will also produce more oxidants to compensate for the antioxidants used. The bodies oxidant system which is involved in the following biological processes. 1) Hydroxyl radical OH* apoptosis or pre-programmed cell death, 2) Nitric oxide NO* in blood pressure and sexual function, 3) hydrogen peroxide as a signaling molecule in many biological pathways.

Balance Hypothesis



If antioxidants are added in excess in the diet then there are many biological processes are likely to be effected. Do we know where these antioxidants are going in our bodies? They love coordinating with metals in enzymes and binding to proteins. The can act as inhibitors. Yes they can. Do we need these enzyme inhibitors in our diets?

From a Darwinian perspective the plants have developed a defense system which impacts on the health and well-being of animals that feed on the plants. Plants and animals have evolved in a dynamic relationship at many levels they need one another and are tied into a symbiotic relationship exchanging gases CO2 and O2. However, when highly purified antioxidants that are added into a humans diet which capture radicals (singlet electron compounds) appear to be able to inhibit many biochemical pathways. Therefore, impacting on human health and well being. The more anti-oxidants added the more stable the cell will become that could result in a continuous accumulation in damage without an ability to undergo apoptosis. The body will reduce the production of its own anti-oxidant systems and enzymes because it can use the external sourced of anti-oxidants. To counter balance the effects of external anti-oxidants the body may also generate more free radicals to compensate for the anti-oxidants.

So the initial use of anti-oxidants will produce an improvement due to the compensation and changes that occur within the body to address the use of additional anti-oxidants in the diet. This suggest that purified anti-oxidants used in the diet are initially beneficial but then are detrimental to ones health and well-being and have the potential to lead to the formation of disease.

On the other hand if additional oxidants are added to the body then the reverse will be observed. The body will produce more anti-oxidant enzyme to compensate and the body will have higher energy levels and the person will have greater vitality. Therefore, there is a significant body of evidence for the health giving properties of radicals and their involvement in many biochemical pathways in your body. The ability of radicals to generate energy via electron transport, radicals ability to hydroxylate neurotransmitters and their involvement in various functional biochemical pathways suggests we need to reconsider the widespread use of anti-oxidants as an evidence based approach for maintaining health and well-being. Human disease rates are on the rise. What is the underlying reason why? Time for a rethink in human health and well-being.